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Scientific publications

  • article Bouirdene SG, Gotty S, Leclercq M, Joly-Beauparlant C, Texeraud E, Bilodeau S, Droit A

    RnaXtract, a tool for extracting gene expression, variants, and cell-type composition from bulk RNA sequencing

    Sci Rep 15 (1), 2025.

    DOI PUBMED
  • article Yolchuyeva S, Ebrahimpour L, Lemaréchal Y, Joubert P, Bilodeau S, Després P, Manem VSK, Manem VS

    Whole-Slide Imaging and Radiological Features Predict Clinical Outcomes in Patients With Neuroendocrine Tumors of the Lung

    Mod Pathol 38 (12), 2025.

    DOI PUBMED
  • article Lee M, Mangnier L, Padilla CC, Lee DP, Tan W, Zheng WH, Gan LH, Chen CK, Lim YP, Wang RMQ, Li PY, Zhu Y, Bilodeau S, Bureau A, Foo RS, Anene-Nzelu CG

    CTCF Mediates the Cis-Regulatory Hubs in Mouse Hearts

    Int J Mol Sci 26 (19), 2025.

    DOI PUBMED
  • article Dia AK, Kolnohuz A, Yolchuyeva S, Tonneau M, Lamaze F, Orain M, Gagné A, Blais F, Coulombe F, Malo J, Belkaid W, Elkrief A, Williamson D, Routy B, Joubert P, Laplante M, Bilodeau S, Manem VS

    Computational analysis of whole slide images predicts PD-L1 expression and progression-free survival in immunotherapy-treated non-small cell lung cancer patients

    J Transl Med 23 (1), 2025.

    DOI PUBMED
  • article Souli I, Lapointe J, Kinsley-Marlie J, Chiquette J, Dorval M, Diorio C, Lauzier S, Audet-Walsh É and Bilodeau S, Côté M, Brisson C, Charette N, Fortier P, Paquette JS, Fradet Y, Savard J, Fradet V, Nabi H

    Feasibility and acceptability of a personalised primary prevention strategy for women and men at high risk of breast and prostate cancer: the 3PC study protocol for a pilot rand…

    BMJ Open 15 (2), 2025.

    DOI PUBMED
  • article Segovia C, Desrosiers V, Khadangi F, Robitaille K, Armero VS, D'Astous M, Khelifi G, Bergeron A, Hussein S, Richer M, Bossé Y, Fradet Y, Fradet V, Bilodeau S

    A versatile and efficient method to isolate nuclei from low-input cryopreserved tissues for single-nuclei transcriptomics

    Sci Rep 15 (1), 2025.

    DOI PUBMED
  • article Kumar A, Schwab M, Laborit Labrada B, Silveira MAD, Goudreault M, Fournier É and Bellmann K, Beauchemin N, Gingras AC, Bilodeau S, Laplante M, Marette A

    SHP-1 phosphatase acts as a coactivator of PCK1 transcription to control gluconeogenesis

    J Biol Chem 299 (9), 2023.

    DOI PUBMED
  • article Bouirdene S, Leclercq M, Quitté L, Bilodeau S, Droit A

    BioDiscViz: A visualization support and consensus signature selector for BioDiscML results

    PLoS One 18 (11), 2023.

    DOI PUBMED
  • article Tav C, Fournier É and Fournier M, Khadangi F, Baguette A, Côté MC, Silveira MAD, Bérubé-Simard FA, Bourque G, Droit A, Bilodeau S

    Glucocorticoid stimulation induces regionalized gene responses within topologically associating domains

    Front Genet 14 2023.

    DOI PUBMED
  • article Silveira MAD, Khadangi F, Mersaoui SY, Naik D, Masson JY, Bilodeau S

    HSP70 mediates a crosstalk between the estrogen and the heat shock response pathways

    J Biol Chem 299 (2), 2023.

    DOI PUBMED
  • article Silveira MAD, Bilodeau S, Greten TF, Wang XW, Trinchieri G

    The gut-liver axis: host microbiota interactions shape hepatocarcinogenesis

    Trends Cancer 8 (7), 2022.

    DOI PUBMED
  • article Mangnier L, Joly-Beauparlant C, Droit A, Bilodeau S, Bureau A

    Cis-regulatory hubs: a new 3D model of complex disease genetics with an application to schizophrenia

    Life Sci Alliance 5 (5), 2022.

    DOI PUBMED